Alright folks, unless someone can replicate this again, and give me the specific steps they used to replicate it, I'm not sure I can do anything with this.
I just tried creating a 2005 Lahman game. I set the draft to 5 rounds. After the game started, I moved some teams to opposite subleagues, created a new schedule, and then simmed up to the Amateur Draft. It was 5 rounds.
I really need a way to narrow this issue down for Markus to have any hope of finding it.
Thanks for your patience.
Steve