I have experienced this same issue post-the most recent patch. I get around it by going to player search and going into the player's profile and setting them on my active roster that way. Then they appear on my active roster. But, if you look in my most recent post about Hayden Penn, you will see that the player still remains where he was originally (i.e. there is still a copy of him as a FA so he can be signed by another team and then you have 2 of the same player)
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