Unfortunately I haven't found a way to fix this... I believe a way to solve this issue would be for Markus to have the games look at the teams and assign the team numbers to each league at the start of each season instead of at the creation of the association (which is what it appears to be currently) this way any chages to the league structure that was done during the off season the game could check and then assign the teams to the appropriate league for records, etc.
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