If you create the game with with import full history "yes" it will import players who did not play in the starting year but played before and after. They will be free agents. If you create the game without a full history import then those players will show up in the game the next year they played assigned to the proper team.
Its not just injured players who are affected. When full minors are not enabled then those who played MLB before and after but were in the minors that year also show up as FAs.
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